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Original research
Reassessment and reclassification of variants of unknown significance in patients with cardiomyopathy in a specialist department
  1. Sinead Horgan1,
  2. Huafrin Kotwal1,
  3. Antonetta Malan1,
  4. Neha Sekhri1,2,
  5. Luis R Lopes1,3
  1. 1 ICVD, St Bartholomew's Hospital, London, UK
  2. 2 Queen Mary University of London, London, UK
  3. 3 University College London Institute of Cardiovascular Science, London, UK
  1. Correspondence to Sinead Horgan; sinead.horgan1{at}nhs.net

Abstract

Background The utility of diagnostic genetic testing in cardiomyopathy has grown significantly, due to the discovery of novel genes and greater awareness among healthcare professionals. However, a substantial proportion of cases (around 50%) yield no causative genetic variants or have variants of unknown significance (VUS), limiting their use in clinical management and familial screening. The increase in data quantity and quality in reference databases, coupled with variant interpretation guidelines, allows for periodic reanalysis of VUS, potentially reducing diagnostic gaps.

Methods This study presents a review of VUS results identified in hypertrophic cardiomyopathy (HCM), dilated cardiomyopathy (DCM) and arrhythmogenic cardiomyopathy (ACM) probands over a 5-year period, using American College of Medical Genetics and Genomics criteria. A total of 248 VUS from 233 reports were reviewed, with the majority of patients with a diagnosis of HCM (n=112), followed by DCM (n=99) and ACM (n=22).

Results Four (1.6%) VUS showed sufficient evidence to upgrade to likely pathogenic/pathogenic status, while 8 (3.2%) were downgraded to benign. The majority 236 (95.2%) remained VUS after reanalysis, of which 12 (4.7%) had potential to reclassification to benign or likely pathogenic/pathogenic depending on further data.

Conclusion The study emphasises the importance of periodic re-evaluation of VUS results for clinical management of probands as well as cascade testing. We show feasibility of conducting reclassification analysis in a referral centre, but highlight the need for ongoing collaboration between clinical and laboratory experts. Our work supports the current recommendation of reclassification every 3–5 years to keep pace with evolving evidence.

  • Cardiomyopathies
  • Genetic Counseling
  • Genetics
  • Genetic Testing
  • Genetic Variation

Data availability statement

All data relevant to the study are included in the article or uploaded as supplementary information.

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Data availability statement

All data relevant to the study are included in the article or uploaded as supplementary information.

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Footnotes

  • Collaborators Not applicable.

  • Contributors Conceptualisation—SH, HK, LRL. Data curation—SH, HK, AM. Formal analysis—SH. Methodology—SH, HK, LRL. Resources—SH, HK. Supervision—LL, NS. Writing—original draft—SH, HK. Writing—review and editing—SH, LRL, NS. Guarantor—SH and LRL.

  • Funding LRL was supported with an UKRI MRC CARP grant (MR/T005181/1) and a NIHR DSE award.

  • Competing interests LRL: speaker fees from Sanofi-Genzyme, Alnylam and BMS, grant from BMS and consulting from Novo Nordisk and BMS.

  • Provenance and peer review Not commissioned; externally peer-reviewed.

  • Supplemental material This content has been supplied by the author(s). It has not been vetted by BMJ Publishing Group Limited (BMJ) and may not have been peer-reviewed. Any opinions or recommendations discussed are solely those of the author(s) and are not endorsed by BMJ. BMJ disclaims all liability and responsibility arising from any reliance placed on the content. Where the content includes any translated material, BMJ does not warrant the accuracy and reliability of the translations (including but not limited to local regulations, clinical guidelines, terminology, drug names and drug dosages), and is not responsible for any error and/or omissions arising from translation and adaptation or otherwise.